Multi-Spectra Peptide Sequencing and its Applications to Multistage Mass Spectrometry
Nuno Bandeira, Jesper Olsen, Matthias Mann, Pavel Pevzner
ISMB 2008 (in press)
The Spectral Networks Approach to the Identification of Proteins and Post-translational Modifications
Nuno Bandeira
Invited chapter, in The Bioanalytical Discovery of Post-translational Modifications
Research Sign Post series (in press), 2008
De Novo Sequencing of Nonribosomal Peptides
Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger Linington, Pieter Dorrestein, Pavel Pevzner
RECOMB 2008, 12th Annual International Conference on Research in Computational Molecular Biology.
Clustering millions of tandem mass spectra
Ari Frank, Nuno Bandeira, Zhouxin Shen, Stephen Tanner, Steven Briggs, Richard Smith, Pavel Pevzner
J Proteome Res. Jan;7(1):113-22. Epub 2007 Dec 8., PMID: 18067247
Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications
Nuno Bandeira
Biotechniques, 2007 Jun;42(6):687,
PMID: 17612289
Shotgun Protein Sequencing: Assembly of MS/MS Mass Spectra from Mixtures of Modified Proteins
Nuno Bandeira, Karl Clauser, Pavel Pevzner
Molecular and Cellular Proteomics, 2007 Jul;6(7):1123-34. Epub 2007 Apr 19 (online version)PMID: 17446555
Protein identification by spectral networks analysis
Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel Pevzner
Proceedings of the National Academy of Sciences (PNAS), 2007 Apr 10;104(15):6140-5 (online version)PMID: 17404225
A new approach to protein identification
Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel Pevzner RECOMB 2006, 10th Annual International Conference on Research in Computational Molecular Biology.
Analysis of EEG of shooters Nuno Bandeira, Vitor Sousa Lobo, Fernando Moura-Pires Proceedings of the
International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences METMBS'2000, 2000.
EEG/ECG data fusion using Self-Organising Maps Nuno Filipe
Cabrita Bandeira, Vitor Sousa Lobo, Fernando Moura-Pires Proceedings of
EuroFusion99, International Conference on Data Fusion, 1999, Joliver
Press, ISBN: 0-95337132-0-2 IEE/ISIF, Startford-upon-Avon, UK
Training a Self-Organizing Map distributed on a PVM network Nuno Filipe Cabrita Bandeira, Vitor Sousa Lobo, Fernando Moura-Pires
Proceedings of the International Joint Conference on Neural Networks
(IJCNN98 / WCCI98) IEEE, Alaska, USA
Distributed Kohonen Networks for Passive Sonar Based Classification Vitor Sousa Lobo, Nuno Filipe Cabrita Bandeira, Fernando Moura-Pires
Proceedings of the 1998 International Conference on
Multisource-Multisensor Information Fusion (FUSION98), Las Vegas, USA
Ship recognition using Distributed Self Organizing Maps Vitor
Sousa Lobo, Nuno Filipe Cabrita Bandeira, Fernando Moura-Pires Proceedings
of the 1998 International Conference on Engineering Applications of Neural
Networks (EANN98), Gibraltar
Tutorials and courses
Invited 1-week course: Computational Approaches to Proteomics
Ph.D. program in Computational Biology
Gulbenkian Institute for the Sciences (IGC)
Lisbon, Portugal
Algorithmic Mass Spectrometry
Algorithmic Biology 2006, jointly with Stephen Tanner
University of California, San Diego, USA
Identification of Proteins and Post-translational Modifications via Spectral Networks Analysis
Computational Systems Bioinformatics (CSB'2006)
Stanford, USA
Invited talks
Multi-Spectra Peptide Sequencing and its Applications to Multi-stage Mass Spectrometry
Second workshop on Computational Proteomics, Dagstuhl, Germany
Spectral Alignment Approaches to the Blind Discovery of Post-translational Modifications
12th International Meeting of the Association of Biomolecular Resource Facilities: "ABRF 2008: Enabling Technologies in the Life Sciences"
E Pluribus Unum: Enabling Discovery by Combining Tandem Mass Spectra from Overlapping Peptides
Mining the Plasma Proteome, Cambridge Healthtech Institute (CHI) seventh annual PepTalk
Spectral Networks: A New Approach to the Identification of Proteins and Post-translational Modifications
National Institutes of Health (Bethesda, USA)
HUPO Young Investigator Award talk: Overlapping MS/MS spectra and disease proteomics
Human Proteome Organization 5th Annual World Congress (HUPO 2006), Long Beach, USA
Shotgun Protein Sequencing of Novel Proteins by Assembly of MS/MS Spectra
Genentech Inc., San Francisco, USA
Shotgun Protein Sequencing of Snake Venom Proteins
Southern California Bioinformatics Summer Institute, Los Angeles, USA
Spectral Networks for Identification of Proteins and Post-translational Modifications
University of Lisbon, Portugal
A New Approach to Protein Identification
Burnham Institute, San Diego, USA
Shotgun Protein Sequencing
Workshop on Computational Proteomics and Mass Spectrometry, Mathematical Biosciences Institute, Ohio State University, USA
